askWheat

Gene view: relationships, mutations, Watkins haplotypes and traits. ← Back to search · Knockout screen · Order lines

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EMS mutations (Cadenza, Kronos) above each gene model and exome-capture diversity variants below, by RefSeq v1.0 position; homoeologues shown as separate tracks. Click an EMS mutation to add its line to the order list.

Predicted loss-of-function alleles

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Share of each subgenome copy in the summed TPM per tissue (Expression Atlas baseline experiments), with the homoeologue expression balance category (Ramírez-González et al. 2018; 1:1:1 triads only).

Data: Ensembl Plants (Compara, EMS and exome-capture variants: Krasileva et al. 2017; He et al. 2019), Watkins Wheat Pangenome and WatSeq (IBSpy blocks or SNP haplotypes), Expression Atlas and askWheat RNA-seq, Europe PMC. Haplotype–trait tests are exploratory and not corrected for population structure.